IL_6ZSD_111

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAUC*GCCCU

Length

10 nucleotides

Bulged bases

6ZSD|1|AA|U|1187, 6ZSD|1|AA|A|1188, 6ZSD|1|AA|U|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSD_111 not in the Motif Atlas

Geometric match to IL_8P9A_431

Geometric discrepancy: 0.2715

The information below is about IL_8P9A_431

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

6ZSD|1|AA|A|1186
6ZSD|1|AA|U|1187
6ZSD|1|AA|A|1188
6ZSD|1|AA|U|1189
6ZSD|1|AA|C|1190
*
6ZSD|1|AA|G|1464
6ZSD|1|AA|C|1465
6ZSD|1|AA|C|1466
6ZSD|1|AA|C|1467
6ZSD|1|AA|U|1468

Current chains

Chain AA

12SrRNA

Nearby chains

Chain A2

Coiled-coil-helix-coiled-coil-helix domain-containing protein 1

Chain AF

28S ribosomal protein S7, mitochondrial

Chain AG

28S ribosomal protein S9, mitochondrial