IL_6ZSE_056

3D structure

PDB id

6ZSE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSE_056 not in the Motif Atlas

Geometric match to IL_3SZX_001

Geometric discrepancy: 0.1509

The information below is about IL_3SZX_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6ZSE|1|XA|G|1913
6ZSE|1|XA|A|1914
6ZSE|1|XA|C|1915
*
6ZSE|1|XA|G|2004
6ZSE|1|XA|C|2005
6ZSE|1|XA|C|2006

Current chains

Chain XA

16S rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain XF

39S ribosomal protein L4, mitochondrial