IL_6ZSE_092

3D structure

PDB id

6ZSE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

6ZSE|1|XA|G|3063, 6ZSE|1|XA|A|3064

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSE_092 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.2443

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6ZSE|1|XA|A|2997
6ZSE|1|XA|U|2998
6ZSE|1|XA|C|2999
*
6ZSE|1|XA|G|3061
6ZSE|1|XA|U|3062
6ZSE|1|XA|G|3063
6ZSE|1|XA|A|3064
6ZSE|1|XA|U|3065

Current chains

Chain XA

16S rRNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain XE

39S ribosomal protein L3, mitochondrial