IL_6ZSE_109

3D structure

PDB id

6ZSE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UAUA*UG

Length

6 nucleotides

Bulged bases

6ZSE|1|AA|A|1258, 6ZSE|1|AA|U|1259

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSE_109 not in the Motif Atlas

Geometric match to IL_1FUF_002

Geometric discrepancy: 0.3927

The information below is about IL_1FUF_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6ZSE|1|AA|U|1257
6ZSE|1|AA|A|1258
6ZSE|1|AA|U|1259
6ZSE|1|AA|A|1260
*
6ZSE|1|AA|U|1335
6ZSE|1|AA|G|1336

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AH

28S ribosomal protein S10, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial