IL_6ZSG_080

3D structure

PDB id

6ZSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

6ZSG|1|XA|C|2718, 6ZSG|1|XA|U|3100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSG_080 not in the Motif Atlas

Geometric match to IL_5TBW_092

Geometric discrepancy: 0.3879

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ZSG|1|XA|A|2717
6ZSG|1|XA|C|2718
6ZSG|1|XA|G|2719
*
6ZSG|1|XA|C|3099
6ZSG|1|XA|U|3100
6ZSG|1|XA|A|3101
6ZSG|1|XA|U|3102

Current chains

Chain XA

16S rRNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain XE

39S ribosomal protein L3, mitochondrial

Chain XT

39S ribosomal protein L22, mitochondrial