IL_6ZTJ_056

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTJ_056 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.1575

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6ZTJ|1|AA|C|1259
6ZTJ|1|AA|G|1260
6ZTJ|1|AA|A|1261
6ZTJ|1|AA|C|1262
6ZTJ|1|AA|C|1263
*
6ZTJ|1|AA|G|1272
6ZTJ|1|AA|C|1273
6ZTJ|1|AA|A|1274
6ZTJ|1|AA|A|1275
6ZTJ|1|AA|G|1276

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S14

Chain AS

30S ribosomal protein S19

Chain CF

Transcription termination/antitermination protein NusG