3D structure

PDB id
6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZTJ_071 not in the Motif Atlas
Homologous match to IL_5J7L_250
Geometric discrepancy: 0.0714
The information below is about IL_5J7L_250
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

6ZTJ|1|BA|G|188
6ZTJ|1|BA|G|189
6ZTJ|1|BA|A|190
6ZTJ|1|BA|A|191
6ZTJ|1|BA|C|192
6ZTJ|1|BA|U|193
6ZTJ|1|BA|G|194
*
6ZTJ|1|BA|C|201
6ZTJ|1|BA|U|202
6ZTJ|1|BA|A|203
6ZTJ|1|BA|A|204
6ZTJ|1|BA|G|205
6ZTJ|1|BA|U|206
6ZTJ|1|BA|A|207
6ZTJ|1|BA|C|208

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B4
50S ribosomal protein L34
Chain B5
50S ribosomal protein L35
Chain BM
50S ribosomal protein L15
Chain BY
50S ribosomal protein L28

Coloring options:


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