IL_6ZTJ_076

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

6ZTJ|1|BA|A|504, 6ZTJ|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTJ_076 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.084

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

6ZTJ|1|BA|G|481
6ZTJ|1|BA|A|482
6ZTJ|1|BA|A|483
6ZTJ|1|BA|C|484
*
6ZTJ|1|BA|G|496
6ZTJ|1|BA|A|497
6ZTJ|1|BA|G|498
6ZTJ|1|BA|U|499
6ZTJ|1|BA|G|500
6ZTJ|1|BA|A|501
6ZTJ|1|BA|A|502
6ZTJ|1|BA|A|503
6ZTJ|1|BA|A|504
6ZTJ|1|BA|A|505
6ZTJ|1|BA|G|506
6ZTJ|1|BA|A|507
6ZTJ|1|BA|A|508
6ZTJ|1|BA|C|509

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BT

50S ribosomal protein L22

Chain BV

50S ribosomal protein L24