IL_6ZTJ_114

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTJ_114 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.0746

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6ZTJ|1|BA|C|1357
6ZTJ|1|BA|G|1358
6ZTJ|1|BA|A|1359
6ZTJ|1|BA|G|1360
6ZTJ|1|BA|G|1361
*
6ZTJ|1|BA|C|1370
6ZTJ|1|BA|G|1371
6ZTJ|1|BA|U|1372
6ZTJ|1|BA|A|1373
6ZTJ|1|BA|G|1374

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2

Chain BY

50S ribosomal protein L28