IL_6ZTJ_140
3D structure
- PDB id
- 6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 6ZTJ|1|BA|A|1938, 6ZTJ|1|BA|U|1944
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZTJ_140 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1257
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
6ZTJ|1|BA|C|1934
6ZTJ|1|BA|G|1935
6ZTJ|1|BA|A|1936
6ZTJ|1|BA|A|1937
6ZTJ|1|BA|A|1938
6ZTJ|1|BA|5MU|1939
6ZTJ|1|BA|U|1940
6ZTJ|1|BA|C|1941
6ZTJ|1|BA|C|1942
6ZTJ|1|BA|U|1943
6ZTJ|1|BA|U|1944
6ZTJ|1|BA|G|1945
*
6ZTJ|1|BA|C|1961
6ZTJ|1|BA|5MC|1962
6ZTJ|1|BA|U|1963
6ZTJ|1|BA|G|1964
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AX
- Transfer RNA; tRNA
- Chain BC
- 50S ribosomal protein L2
Coloring options: