IL_6ZTJ_160

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTJ_160 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.122

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6ZTJ|1|BA|C|2466
6ZTJ|1|BA|C|2467
6ZTJ|1|BA|A|2468
6ZTJ|1|BA|A|2469
6ZTJ|1|BA|G|2470
*
6ZTJ|1|BA|C|2480
6ZTJ|1|BA|G|2481
6ZTJ|1|BA|A|2482
6ZTJ|1|BA|C|2483
6ZTJ|1|BA|G|2484

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AX

Transfer RNA; tRNA

Chain B6

50S ribosomal protein L36

Chain BN

50S ribosomal protein L16