IL_6ZTL_024

3D structure

PDB id

6ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state bound to NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTL_024 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.1228

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6ZTL|1|AA|C|504
6ZTL|1|AA|G|505
6ZTL|1|AA|G|506
6ZTL|1|AA|C|507
6ZTL|1|AA|U|508
6ZTL|1|AA|A|509
6ZTL|1|AA|A|510
6ZTL|1|AA|C|511
*
6ZTL|1|AA|G|540
6ZTL|1|AA|G|541

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12

Chain AV

mRNA