3D structure

PDB id
6ZTM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in collided state without NusG
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
6ZTM|1|BA|A|504, 6ZTM|1|BA|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZTM_076 not in the Motif Atlas
Homologous match to IL_5J7L_255
Geometric discrepancy: 0.067
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

6ZTM|1|BA|G|481
6ZTM|1|BA|A|482
6ZTM|1|BA|A|483
6ZTM|1|BA|C|484
*
6ZTM|1|BA|G|496
6ZTM|1|BA|A|497
6ZTM|1|BA|G|498
6ZTM|1|BA|U|499
6ZTM|1|BA|G|500
6ZTM|1|BA|A|501
6ZTM|1|BA|A|502
6ZTM|1|BA|A|503
6ZTM|1|BA|A|504
6ZTM|1|BA|A|505
6ZTM|1|BA|G|506
6ZTM|1|BA|A|507
6ZTM|1|BA|A|508
6ZTM|1|BA|C|509

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BT
50S ribosomal protein L22
Chain BV
50S ribosomal protein L24

Coloring options:


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