IL_6ZTM_125

3D structure

PDB id

6ZTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state without NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTM_125 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.0584

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6ZTM|1|BA|G|1651
6ZTM|1|BA|A|1652
6ZTM|1|BA|G|1653
6ZTM|1|BA|A|1654
6ZTM|1|BA|A|1655
6ZTM|1|BA|C|1656
*
6ZTM|1|BA|G|2004
6ZTM|1|BA|A|2005
6ZTM|1|BA|C|2006

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BO

50S ribosomal protein L17