IL_6ZTM_128

3D structure

PDB id

6ZTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state without NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

6ZTM|1|BA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTM_128 not in the Motif Atlas

Homologous match to IL_5J7L_307

Geometric discrepancy: 0.0795

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6ZTM|1|BA|A|1669
6ZTM|1|BA|C|1670
6ZTM|1|BA|U|1671
6ZTM|1|BA|A|1672
6ZTM|1|BA|G|1673
6ZTM|1|BA|G|1674
*
6ZTM|1|BA|C|1990
6ZTM|1|BA|U|1991
6ZTM|1|BA|G|1992
6ZTM|1|BA|U|1993

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BL

50S ribosomal protein L14