3D structure

PDB id
6ZTM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in collided state without NusG
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZTM_159 not in the Motif Atlas
Homologous match to IL_5J7L_338
Geometric discrepancy: 0.1334
The information below is about IL_5J7L_338
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

6ZTM|1|BA|C|2466
6ZTM|1|BA|C|2467
6ZTM|1|BA|A|2468
6ZTM|1|BA|A|2469
6ZTM|1|BA|G|2470
*
6ZTM|1|BA|C|2480
6ZTM|1|BA|G|2481
6ZTM|1|BA|A|2482
6ZTM|1|BA|C|2483
6ZTM|1|BA|G|2484

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AX
Transfer RNA; tRNA
Chain B6
50S ribosomal protein L36
Chain BN
50S ribosomal protein L16

Coloring options:


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