3D structure

PDB id
6ZTN (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CGAGG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZTN_114 not in the Motif Atlas
Homologous match to IL_5J7L_293
Geometric discrepancy: 0.0845
The information below is about IL_5J7L_293
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

6ZTN|1|BA|C|1357
6ZTN|1|BA|G|1358
6ZTN|1|BA|A|1359
6ZTN|1|BA|G|1360
6ZTN|1|BA|G|1361
*
6ZTN|1|BA|C|1370
6ZTN|1|BA|G|1371
6ZTN|1|BA|U|1372
6ZTN|1|BA|A|1373
6ZTN|1|BA|G|1374

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B4
50S ribosomal protein L34
Chain BC
50S ribosomal protein L2

Coloring options:


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