IL_6ZTN_130

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

6ZTN|1|BA|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTN_130 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.132

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6ZTN|1|BA|U|1712
6ZTN|1|BA|A|1713
6ZTN|1|BA|U|1714
6ZTN|1|BA|G|1715
6ZTN|1|BA|U|1716
6ZTN|1|BA|A|1717
6ZTN|1|BA|G|1718
*
6ZTN|1|BA|U|1742
6ZTN|1|BA|G|1743
6ZTN|1|BA|A|1744
6ZTN|1|BA|A|1745
6ZTN|1|BA|A|1746

Current chains

Chain BA

23S ribosomal RNA

Nearby chains