IL_6ZTN_147

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTN_147 not in the Motif Atlas

Geometric match to IL_5C5W_003

Geometric discrepancy: 0.1216

The information below is about IL_5C5W_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

52

Unit IDs

6ZTN|1|BA|C|2084
6ZTN|1|BA|U|2085
6ZTN|1|BA|U|2086
6ZTN|1|BA|G|2087
*
6ZTN|1|BA|C|2232
6ZTN|1|BA|U|2233
6ZTN|1|BA|G|2234
6ZTN|1|BA|G|2235

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AZ

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L2

Chain BY

50S ribosomal protein L28