IL_6ZTN_163

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

6ZTN|1|BA|A|2572, 6ZTN|1|BA|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTN_163 not in the Motif Atlas

Homologous match to IL_5J7L_341

Geometric discrepancy: 0.0854

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6ZTN|1|BA|C|2512
6ZTN|1|BA|A|2513
*
6ZTN|1|BA|U|2571
6ZTN|1|BA|A|2572
6ZTN|1|BA|C|2573
6ZTN|1|BA|G|2574

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AX

Transfer RNA; tRNA

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L13