3D structure

PDB id
6ZTO (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in uncoupled state 1
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZTO_037 not in the Motif Atlas
Homologous match to IL_5J7L_037
Geometric discrepancy: 0.0778
The information below is about IL_5J7L_037
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

6ZTO|1|AA|C|779
6ZTO|1|AA|A|780
6ZTO|1|AA|A|781
6ZTO|1|AA|A|782
6ZTO|1|AA|C|783
*
6ZTO|1|AA|G|799
6ZTO|1|AA|G|800
6ZTO|1|AA|U|801
6ZTO|1|AA|A|802
6ZTO|1|AA|G|803

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AK
30S ribosomal protein S11
Chain AU
30S ribosomal protein S21
Chain BA
Large subunit ribosomal RNA; LSU rRNA
Chain BC
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1758 s