3D structure

PDB id
6ZTP (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in uncoupled state 6
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZTP_071 not in the Motif Atlas
Geometric match to IL_7RQB_006
Geometric discrepancy: 0.0579
The information below is about IL_7RQB_006
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.7
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

6ZTP|1|BA|G|188
6ZTP|1|BA|G|189
6ZTP|1|BA|A|190
6ZTP|1|BA|A|191
6ZTP|1|BA|C|192
6ZTP|1|BA|U|193
6ZTP|1|BA|G|194
*
6ZTP|1|BA|C|201
6ZTP|1|BA|U|202
6ZTP|1|BA|A|203
6ZTP|1|BA|A|204
6ZTP|1|BA|G|205
6ZTP|1|BA|U|206
6ZTP|1|BA|A|207
6ZTP|1|BA|C|208

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B4
50S ribosomal protein L34
Chain B5
50S ribosomal protein L35
Chain BM
50S ribosomal protein L15
Chain BY
50S ribosomal protein L28

Coloring options:


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