IL_6ZU1_020

3D structure

PDB id

6ZU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU1_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0972

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6ZU1|1|AA|U|409
6ZU1|1|AA|G|410
6ZU1|1|AA|A|411
6ZU1|1|AA|A|412
6ZU1|1|AA|G|413
6ZU1|1|AA|A|414
6ZU1|1|AA|A|415
6ZU1|1|AA|G|416
*
6ZU1|1|AA|U|427
6ZU1|1|AA|G|428
6ZU1|1|AA|U|429
6ZU1|1|AA|A|430
6ZU1|1|AA|A|431
6ZU1|1|AA|A|432
6ZU1|1|AA|G|433

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4