IL_6ZU1_022

3D structure

PDB id

6ZU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

6ZU1|1|AA|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU1_022 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.0679

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6ZU1|1|AA|G|446
6ZU1|1|AA|G|447
6ZU1|1|AA|A|448
6ZU1|1|AA|G|449
6ZU1|1|AA|G|450
*
6ZU1|1|AA|C|483
6ZU1|1|AA|G|484
6ZU1|1|AA|U|485
6ZU1|1|AA|U|486
6ZU1|1|AA|A|487
6ZU1|1|AA|C|488

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AP

30S ribosomal protein S16