IL_6ZU1_062

3D structure

PDB id

6ZU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU1_062 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.0956

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6ZU1|1|AA|G|1416
6ZU1|1|AA|G|1417
6ZU1|1|AA|A|1418
6ZU1|1|AA|G|1419
*
6ZU1|1|AA|U|1481
6ZU1|1|AA|G|1482
6ZU1|1|AA|A|1483
6ZU1|1|AA|C|1484

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain BA

Large subunit ribosomal RNA; LSU rRNA