IL_6ZU1_110

3D structure

PDB id

6ZU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU1_110 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0578

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6ZU1|1|BA|A|1262
6ZU1|1|BA|U|1263
6ZU1|1|BA|A|1264
6ZU1|1|BA|A|1265
6ZU1|1|BA|G|1266
6ZU1|1|BA|U|1267
6ZU1|1|BA|A|1268
6ZU1|1|BA|A|1269
*
6ZU1|1|BA|U|2011
6ZU1|1|BA|G|2012
6ZU1|1|BA|A|2013
6ZU1|1|BA|A|2014
6ZU1|1|BA|A|2015
6ZU1|1|BA|U|2016
6ZU1|1|BA|U|2017

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L32

Chain BE

50S ribosomal protein L4

Chain BT

50S ribosomal protein L22