IL_6ZU1_161

3D structure

PDB id

6ZU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZU1_161 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.1284

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6ZU1|1|BA|C|2466
6ZU1|1|BA|C|2467
6ZU1|1|BA|A|2468
6ZU1|1|BA|A|2469
6ZU1|1|BA|G|2470
*
6ZU1|1|BA|C|2480
6ZU1|1|BA|G|2481
6ZU1|1|BA|A|2482
6ZU1|1|BA|C|2483
6ZU1|1|BA|G|2484

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AX

Transfer RNA; tRNA

Chain B6

50S ribosomal protein L36

Chain BN

50S ribosomal protein L16