IL_6ZUO_046

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZUO_046 not in the Motif Atlas

Homologous match to IL_4V88_428

Geometric discrepancy: 0.1323

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

6ZUO|1|2|A|922
6ZUO|1|2|G|923
*
6ZUO|1|2|C|1019
6ZUO|1|2|A|1020
6ZUO|1|2|U|1021
6ZUO|1|2|U|1022

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain N

40S ribosomal protein S13

Chain W

40S ribosomal protein S15a

Chain b

40S ribosomal protein S27