IL_6ZUO_047

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6ZUO|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZUO_047 not in the Motif Atlas

Geometric match to IL_4KQ0_003

Geometric discrepancy: 0.2857

The information below is about IL_4KQ0_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

6ZUO|1|2|G|925
6ZUO|1|2|A|926
6ZUO|1|2|C|927
*
6ZUO|1|2|G|1014
6ZUO|1|2|U|1015
6ZUO|1|2|U|1016
6ZUO|1|2|U|1017

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain N

40S ribosomal protein S13

Chain W

40S ribosomal protein S15a

Chain b

40S ribosomal protein S27