IL_6ZUO_069
3D structure
- PDB id
- 6ZUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 6ZUO|1|2|C|1331, 6ZUO|1|2|U|1494, 6ZUO|1|2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZUO_069 not in the Motif Atlas
- Geometric match to IL_4V88_510
- Geometric discrepancy: 0.1125
- The information below is about IL_4V88_510
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62984.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6ZUO|1|2|U|1329
6ZUO|1|2|G|1330
6ZUO|1|2|C|1331
6ZUO|1|2|A|1332
6ZUO|1|2|U|1333
6ZUO|1|2|G|1334
6ZUO|1|2|G|1335
*
6ZUO|1|2|U|1492
6ZUO|1|2|C|1493
6ZUO|1|2|U|1494
6ZUO|1|2|G|1495
6ZUO|1|2|U|1496
6ZUO|1|2|G|1497
6ZUO|1|2|A|1498
6ZUO|1|2|U|1499
6ZUO|1|2|G|1500
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain K
- 40S ribosomal protein S10
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29
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