IL_6ZUO_084

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZUO_084 not in the Motif Atlas

Homologous match to IL_8C3A_475

Geometric discrepancy: 0.4546

The information below is about IL_8C3A_475

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6ZUO|1|2|C|1717
6ZUO|1|2|G|1718
6ZUO|1|2|A|1719
6ZUO|1|2|U|1720
*
6ZUO|1|2|A|1813
6ZUO|1|2|G|1814
6ZUO|1|2|A|1815
6ZUO|1|2|G|1816

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains