IL_6ZUO_092

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAAAAUUA*UACCGCAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZUO|1|2|G|807
6ZUO|1|2|A|808
6ZUO|1|2|A|809
6ZUO|1|2|A|810
6ZUO|1|2|A|811
6ZUO|1|2|A|812
6ZUO|1|2|A|813
6ZUO|1|2|U|814
6ZUO|1|2|U|815
6ZUO|1|2|A|816
*
6ZUO|1|2|U|848
6ZUO|1|2|A|849
6ZUO|1|2|C|850
6ZUO|1|2|C|851
6ZUO|1|2|G|852
6ZUO|1|2|C|853
6ZUO|1|2|A|854
6ZUO|1|2|G|855
6ZUO|1|2|C|856

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain L

40S ribosomal protein S11

Chain W

40S ribosomal protein S15a