IL_6ZUO_096

3D structure

PDB id

6ZUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

6ZUO|1|2|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZUO_096 not in the Motif Atlas

Homologous match to IL_8P9A_438

Geometric discrepancy: 0.1211

The information below is about IL_8P9A_438

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6ZUO|1|2|U|1329
6ZUO|1|2|G|1330
6ZUO|1|2|C|1331
6ZUO|1|2|A|1332
6ZUO|1|2|U|1333
*
6ZUO|1|2|A|1498
6ZUO|1|2|U|1499
6ZUO|1|2|G|1500

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain K

40S ribosomal protein S10

Chain U

40S ribosomal protein S20

Chain d

40S ribosomal protein S29