IL_6ZV6_031

3D structure

PDB id

6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

6ZV6|1|2|A|590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZV6_031 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.3044

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6ZV6|1|2|G|563
6ZV6|1|2|A|564
6ZV6|1|2|G|565
*
6ZV6|1|2|C|585
6ZV6|1|2|G|586
6ZV6|1|2|A|587
6ZV6|1|2|G|588
6ZV6|1|2|G|589
6ZV6|1|2|A|590
6ZV6|1|2|U|591
6ZV6|1|2|C|592

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30