IL_6ZV6_076

3D structure

PDB id

6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUUAC*GUCCCCCAACU

Length

17 nucleotides

Bulged bases

6ZV6|1|2|C|1434, 6ZV6|1|2|C|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZV6|1|2|A|1405
6ZV6|1|2|G|1406
6ZV6|1|2|U|1407
6ZV6|1|2|U|1408
6ZV6|1|2|A|1409
6ZV6|1|2|C|1410
*
6ZV6|1|2|G|1431
6ZV6|1|2|U|1432
6ZV6|1|2|C|1433
6ZV6|1|2|C|1434
6ZV6|1|2|C|1435
6ZV6|1|2|C|1436
6ZV6|1|2|C|1437
6ZV6|1|2|A|1438
6ZV6|1|2|A|1439
6ZV6|1|2|C|1440
6ZV6|1|2|U|1441

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16

Chain U

40S ribosomal protein S20