IL_6ZV6_079

3D structure

PDB id

6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCUACCC*GGUAACC

Length

17 nucleotides

Bulged bases

6ZV6|1|2|C|1554, 6ZV6|1|2|U|1555, 6ZV6|1|2|A|1580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZV6|1|2|G|1550
6ZV6|1|2|U|1551
6ZV6|1|2|G|1552
6ZV6|1|2|C|1553
6ZV6|1|2|C|1554
6ZV6|1|2|U|1555
6ZV6|1|2|A|1556
6ZV6|1|2|C|1557
6ZV6|1|2|C|1558
6ZV6|1|2|C|1559
*
6ZV6|1|2|G|1576
6ZV6|1|2|G|1577
6ZV6|1|2|U|1578
6ZV6|1|2|A|1579
6ZV6|1|2|A|1580
6ZV6|1|2|C|1581
6ZV6|1|2|C|1582

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain K

40S ribosomal protein S10

Chain T

40S ribosomal protein S19

Chain U

40S ribosomal protein S20

Chain d

40S ribosomal protein S29