IL_6ZV6_096
3D structure
- PDB id
- 6ZV6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZV6_096 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.3307
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZV6|1|2|C|1098
6ZV6|1|2|G|1099
6ZV6|1|2|A|1100
6ZV6|1|2|U|1101
6ZV6|1|2|G|1102
6ZV6|1|2|C|1103
*
6ZV6|1|2|G|1129
6ZV6|1|2|G|1130
6ZV6|1|2|G|1131
6ZV6|1|2|C|1132
6ZV6|1|2|A|1133
6ZV6|1|2|G|1134
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- 40S ribosomal protein SA
- Chain B
- 40S ribosomal protein S3a
- Chain N
- 40S ribosomal protein S13
- Chain a
- 40S ribosomal protein S26
- Chain b
- 40S ribosomal protein S27
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