IL_6ZVH_029

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUAC*GUAAU

Length

9 nucleotides

Bulged bases

6ZVH|1|2|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVH_029 not in the Motif Atlas

Geometric match to IL_4WF9_085

Geometric discrepancy: 0.3528

The information below is about IL_4WF9_085

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

6ZVH|1|2|A|529
6ZVH|1|2|U|530
6ZVH|1|2|A|531
6ZVH|1|2|C|532
*
6ZVH|1|2|G|552
6ZVH|1|2|U|553
6ZVH|1|2|A|554
6ZVH|1|2|A|555
6ZVH|1|2|U|556

Current chains

Chain 2

18S rRNA

Nearby chains

Chain e

40S ribosomal protein S30

Chain i

Endothelial differentiation-related factor 1