IL_6ZVH_030

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVH_030 not in the Motif Atlas

Geometric match to IL_5UNE_006

Geometric discrepancy: 0.3124

The information below is about IL_5UNE_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_38565.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6ZVH|1|2|G|535
6ZVH|1|2|A|536
6ZVH|1|2|C|537
*
6ZVH|1|2|G|546
6ZVH|1|2|G|547
6ZVH|1|2|C|548
6ZVH|1|2|C|549

Current chains

Chain 2

18S rRNA

Nearby chains

Chain e

40S ribosomal protein S30

Chain i

Endothelial differentiation-related factor 1