IL_6ZVH_083

3D structure

PDB id

6ZVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

EDF1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

6ZVH|1|2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVH_083 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3345

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_37443.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

6ZVH|1|2|C|1708
6ZVH|1|2|G|1709
6ZVH|1|2|C|1710
6ZVH|1|2|U|1711
*
6ZVH|1|2|A|1822
6ZVH|1|2|A|1823
6ZVH|1|2|A|1824
6ZVH|1|2|A|1825
6ZVH|1|2|G|1826

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30

Chain y

Cell growth-regulating nucleolar protein