IL_6ZVJ_011

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVJ_011 not in the Motif Atlas

Geometric match to IL_4V88_393

Geometric discrepancy: 0.3344

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6ZVJ|1|2|U|116
6ZVJ|1|2|C|117
6ZVJ|1|2|C|118
6ZVJ|1|2|U|119
6ZVJ|1|2|U|120
6ZVJ|1|2|U|121
*
6ZVJ|1|2|A|343
6ZVJ|1|2|U|344
6ZVJ|1|2|U|345
6ZVJ|1|2|C|346
6ZVJ|1|2|G|347

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain q

40S ribosomal protein S4, X isoform

Chain t

40S ribosomal protein S8