IL_6ZVJ_023

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6ZVJ|1|2|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVJ_023 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.1804

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45649.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6ZVJ|1|2|U|366
6ZVJ|1|2|U|367
6ZVJ|1|2|U|368
6ZVJ|1|2|C|369
6ZVJ|1|2|G|370
6ZVJ|1|2|A|371
*
6ZVJ|1|2|U|393
6ZVJ|1|2|G|394

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

Eukaryotic translation initiation factor 3 subunit C

Chain n

40S ribosomal protein S11

Chain t

40S ribosomal protein S8