IL_6ZVJ_027

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

6ZVJ|1|2|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVJ_027 not in the Motif Atlas

Geometric match to IL_4V88_407

Geometric discrepancy: 0.2177

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6ZVJ|1|2|U|487
6ZVJ|1|2|U|488
6ZVJ|1|2|A|489
*
6ZVJ|1|2|U|511
6ZVJ|1|2|A|512

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

ATP-binding cassette sub-family E member 1

Chain c

40S ribosomal protein S9

Chain q

40S ribosomal protein S4, X isoform

Chain z

40S ribosomal protein S24