IL_6ZVJ_028
3D structure
- PDB id
- 6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human ABCE1-bound 43S pre-initiation complex - State II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCACU*AG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVJ_028 not in the Motif Atlas
- Geometric match to IL_6CZR_127
- Geometric discrepancy: 0.1842
- The information below is about IL_6CZR_127
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_03109.2
- Basepair signature
- cWW-cSH-cWS-tWH-cWW
- Number of instances in this motif group
- 5
Unit IDs
6ZVJ|1|2|C|491
6ZVJ|1|2|C|492
6ZVJ|1|2|A|493
6ZVJ|1|2|C|494
6ZVJ|1|2|U|495
*
6ZVJ|1|2|A|508
6ZVJ|1|2|G|509
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- ATP-binding cassette sub-family E member 1
- Chain c
- 40S ribosomal protein S9
- Chain q
- 40S ribosomal protein S4, X isoform
- Chain z
- 40S ribosomal protein S24
Coloring options: