IL_6ZVJ_042

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVJ_042 not in the Motif Atlas

Homologous match to IL_4V88_424

Geometric discrepancy: 0.3234

The information below is about IL_4V88_424

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6ZVJ|1|2|U|805
6ZVJ|1|2|U|806
6ZVJ|1|2|G|807
*
6ZVJ|1|2|C|856
6ZVJ|1|2|U|857
6ZVJ|1|2|A|858

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain f

40S ribosomal protein S15a

Chain n

40S ribosomal protein S11

Chain q

40S ribosomal protein S4, X isoform