3D structure

PDB id
6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a human ABCE1-bound 43S pre-initiation complex - State II
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGC*GCAC
Length
7 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZVJ_062 not in the Motif Atlas
Geometric match to IL_5ML7_010
Geometric discrepancy: 0.2998
The information below is about IL_5ML7_010
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_68118.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
27

Unit IDs

6ZVJ|1|2|G|1235
6ZVJ|1|2|G|1236
6ZVJ|1|2|C|1237
*
6ZVJ|1|2|G|1520
6ZVJ|1|2|C|1521
6ZVJ|1|2|A|1522
6ZVJ|1|2|C|1523

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain k
40S ribosomal protein S18
Chain o
40S ribosomal protein S15

Coloring options:


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