IL_6ZVJ_083
3D structure
- PDB id
- 6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human ABCE1-bound 43S pre-initiation complex - State II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCGAU*AGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZVJ_083 not in the Motif Atlas
- Geometric match to IL_1U6B_002
- Geometric discrepancy: 0.3648
- The information below is about IL_1U6B_002
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
6ZVJ|1|2|C|1716
6ZVJ|1|2|C|1717
6ZVJ|1|2|G|1718
6ZVJ|1|2|A|1719
6ZVJ|1|2|U|1720
*
6ZVJ|1|2|A|1813
6ZVJ|1|2|G|1814
6ZVJ|1|2|A|1815
6ZVJ|1|2|G|1816
6ZVJ|1|2|G|1817
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- ATP-binding cassette sub-family E member 1
- Chain W
- 60S ribosomal protein L41
- Chain j
- 40S ribosomal protein S23
Coloring options: