IL_6ZVJ_104

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

6ZVJ|1|2|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVJ_104 not in the Motif Atlas

Homologous match to IL_8CRE_444

Geometric discrepancy: 0.2637

The information below is about IL_8CRE_444

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

6ZVJ|1|2|G|1206
6ZVJ|1|2|G|1207
6ZVJ|1|2|A|1208
*
6ZVJ|1|2|U|1691
6ZVJ|1|2|U|1692

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S26