IL_6ZVK_007

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UAUGGU*AACG

Length

10 nucleotides

Bulged bases

6ZVK|1|K3|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|K3|U|110
6ZVK|1|K3|A|111
6ZVK|1|K3|U|112
6ZVK|1|K3|G|113
6ZVK|1|K3|G|114
6ZVK|1|K3|U|115
*
6ZVK|1|K3|A|348
6ZVK|1|K3|A|349
6ZVK|1|K3|C|350
6ZVK|1|K3|G|351

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain G3

Ribosomal protein S11

Chain c3

40S ribosomal protein S8

Chain j3

40S ribosomal protein S4