IL_6ZVK_012

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZVK_012 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.3466

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6ZVK|1|K3|C|188
6ZVK|1|K3|U|189
6ZVK|1|K3|G|190
6ZVK|1|K3|A|191
6ZVK|1|K3|C|192
*
6ZVK|1|K3|G|207
6ZVK|1|K3|G|208
6ZVK|1|K3|A|209
6ZVK|1|K3|U|210
6ZVK|1|K3|G|211

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain c3

40S ribosomal protein S8